fslmerge
#!/bin/sh
# Usage: fslmerge <-x/y/z/t/a/tr> <output> <file1 file2 .......> [tr value in seconds]
# -t : concatenate images in time
# -x : concatenate images in the x direction
# -y : concatenate images in the y direction
# -z : concatenate images in the z direction
# -a : auto-choose: single slices -> volume, volumes -> 4D (time series)
# -tr : concatenate images in time and set the output image tr (repetition time)
# to the final option value (tr is sometimes stripped by another program)
# Note that the output file comes before the files to merge!
fslmerge -t img1 img2 img1and2_concatenated
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